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Found 2664 results for class "Germline". Showing entries 1-20.

Graph Cluster Transcripts Mean logCPM Classification Smed/Human type Human gene Annotation
1. MligTC451_29203 Mlig023254.g1 10.53

 Int S/G2/M 

 Germline 

 S/G2/M, no gonads 

X1 HSP90AA1 Mlig023254.g1 {REF} {Length: 3175} {Pfam: Hsp90 protein [PF00183.18, score=778.2]; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase [PF02518.26, score=56.1]; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase [PF13589.6, score=40.4]} {Human: ENSG00000080824, HSP90AA1, heat shock protein 90 alpha family class A member 1, [RH, Score=1074, Expect=0.0]; ENSG00000096384, HSP90AB1, heat shock protein 90 alpha family class B member 1, [RH, Score=1058, Expect=0.0]} {Mouse: ENSMUSG00000021270, Hsp90aa1, heat shock protein 90, alpha (cytosolic), class A member 1, [RH, Score=1088, Expect=0.0]; ENSMUSG00000023944, Hsp90ab1, heat shock protein 90 alpha (cytosolic), class B member 1, [RH, Score=1064, Expect=0.0]} {Dmel: FBgn0001233, Hsp83, Heat shock protein 83, [RH, Score=1101, Expect=0.0]} {Celegans: WBGene00000915, daf-21, Heat shock protein 90, [RH, Score=1035, Expect=0.0]} {Smed: dd_Smed_v6_56_0_2, dd_Smed_v6_56_0_2, [RH, Score=1131, Expect=0.0]} {Ipul: Ipul004370.g2, Ipul004370.g2, [RH, Score=1043, Expect=0.0]} {RNA1509_125, RNA1509_175, RNA1509_24378, RNA1509_5000, RNA1509_7000, RNA1509_806, RNA1509_874} {SMEDTYPE: X1 [raj_facs_types]}
2. MligTC451_29204 Mlig023254.g18 10.35

 Int S/G2/M 

 Germline 

 S/G2/M, no gonads 

X1 HSP90AA1 Mlig023254.g18 {REF} {Length: 3192} {Pfam: Hsp90 protein [PF00183.18, score=778.2]; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase [PF02518.26, score=56.1]; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase [PF13589.6, score=40.4]} {Human: ENSG00000080824, HSP90AA1, heat shock protein 90 alpha family class A member 1, [RH, Score=1074, Expect=0.0]; ENSG00000096384, HSP90AB1, heat shock protein 90 alpha family class B member 1, [RH, Score=1058, Expect=0.0]} {Mouse: ENSMUSG00000021270, Hsp90aa1, heat shock protein 90, alpha (cytosolic), class A member 1, [RH, Score=1088, Expect=0.0]; ENSMUSG00000023944, Hsp90ab1, heat shock protein 90 alpha (cytosolic), class B member 1, [RH, Score=1064, Expect=0.0]} {Dmel: FBgn0001233, Hsp83, Heat shock protein 83, [RH, Score=1101, Expect=0.0]} {Celegans: WBGene00000915, daf-21, Heat shock protein 90, [RH, Score=1035, Expect=0.0]} {Smed: dd_Smed_v6_56_0_2, dd_Smed_v6_56_0_2, [RH, Score=1131, Expect=0.0]} {Ipul: Ipul004370.g2, Ipul004370.g2, [RH, Score=1043, Expect=0.0]} {RNA1509_125, RNA1509_12816, RNA1509_2660, RNA1509_32, RNA1509_7931, RNA1509_9405} {SMEDTYPE: X1 [raj_facs_types]}
3. MligTC451_28957 Mlig010745.g1 9.79

 Int S/G2/M 

 Germline 

Asexual_biased HSPA8 Mlig010745.g1 {REF} {Length: 3249} {Pfam: Hsp70 protein [PF00012.20, score=871.1]; MreB/Mbl protein [PF06723.13, score=63.2]; Cell division protein FtsA [PF14450.6, score=23.2]} {Human: ENSG00000109971, HSPA8, heat shock protein family A (Hsp70) member 8, [RH, Score=1141, Expect=0.0]} {Mouse: ENSMUSG00000015656, Hspa8, heat shock protein 8, [RH, Score=1141, Expect=0.0]; ENSMUSG00000007033, Hspa1l, heat shock protein 1-like, [RH, Score=1085, Expect=0.0]} {Dmel: FBgn0266599, Hsc70-4, Heat shock protein cognate 4, [RH, Score=1093, Expect=0.0]} {Celegans: WBGene00002005, hsp-1, Heat shock 70 kDa protein A, [RH, Score=1079, Expect=0.0]} {Smed: dd_Smed_v6_15_0_1, dd_Smed_v6_15_0_1, [RH, Score=1160, Expect=0.0]} {Ipul: Ipul007699.g2, Ipul007699.g2, [RH, Score=1093, Expect=0.0]} {RNA1509_10685, RNA1509_172, RNA1509_2575, RNA1509_29431, RNA1509_3974} {SMEDTYPE: Asexual_biased [CUFF.501819.0]}
4. MligTC451_30201 Mlig030334.g5 9.47

 Irradiation 

 Int S/G2/M 

 Germline 

Mlig030334.g5 {REF} {Length: 1365} {RNA1509_12334, RNA1509_14264, RNA1509_15, RNA1509_16104, RNA1509_45044}
5. MligTC451_23549 Mlig020807.g7 9.03

 Irradiation 

 Int S/G2/M 

 Germline 

Epidermis I; Xins; Asexual_biased Mlig020807.g7 {REF} {Length: 2347} {Pfam: Immunoglobulin domain [PF13927.6, score=48.4]; Immunoglobulin I-set domain [PF07679.16, score=43.5]; Immunoglobulin domain [PF13895.6, score=34.1]; Immunoglobulin domain [PF00047.25, score=28.5]; Immunoglobulin V-set domain [PF07686.17, score=28.3]} {Smed: dd_Smed_v6_2673_0_1, dd_Smed_v6_2673_0_1, [Score=63.9, Expect=2e-10]} {RNA1509_1239, RNA1509_15245, RNA1509_3377, RNA1509_3600, RNA1509_390, RNA1509_42, RNA1509_43026, RNA1509_95} {SMEDTYPE: Epidermis I [dd_Smed_v6_2673_0_1, contactin 2 (axonal) (CNTN2)]} {SMEDTYPE: Xins [raj_facs_types]} {SMEDTYPE: Asexual_biased [CUFF.293672.0]}
6. MligTC451_39706 Mlig072925.g1 9.02

 Int S/G2/M 

 Germline 

Mlig072925.g1 {REF} {Length: 8227} {Mouse: ENSMUSG00000078253, Krtap16-1, keratin associated protein 16-1, [Score=57.8, Expect=1e-08]} {RNA1509_1575, RNA1509_2339}
7. MligTC451_26524 Mlig039975.g1 9.01

 Int S/G2/M 

 Germline 

 S/G2/M, no gonads 

Neoblast; X1; Sexual_biased PABPC4 Mlig039975.g1 {REF} {Length: 4011} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.22, score=282.3]; Poly-adenylate binding protein, unique domain [PF00658.18, score=106.6]; RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF13893.6, score=41.7]; Nup53/35/40-type RNA recognition motif [PF14605.6, score=34.7]; RNA binding motif [PF08777.11, score=24.7]; Protein of unknown function (DUF4523) [PF15023.6, score=22.9]; RNA recognition motif [PF16367.5, score=21.8]; Occluded RNA-recognition motif [PF16842.5, score=19.6]} {Human: ENSG00000090621, PABPC4, poly(A) binding protein cytoplasmic 4, [RH, Score=736, Expect=0.0]; ENSG00000070756, PABPC1, poly(A) binding protein cytoplasmic 1, [RH, Score=715, Expect=0.0]} {Mouse: ENSMUSG00000011257, Pabpc4, poly(A) binding protein, cytoplasmic 4, [RH, Score=728, Expect=0.0]; ENSMUSG00000022283, Pabpc1, poly(A) binding protein, cytoplasmic 1, [RH, Score=715, Expect=0.0]} {Dmel: FBgn0265297, pAbp, poly(A) binding protein, [RH, Score=671, Expect=0.0]} {Celegans: WBGene00003902, pab-1, Polyadenylate-binding protein, [RH, Score=664, Expect=0.0]} {Smed: dd_Smed_v6_11729_0_1, dd_Smed_v6_11729_0_1, [RH, Score=724, Expect=0.0]} {Ipul: Ipul008508.g1, Ipul008508.g1, [RH, Score=584, Expect=0.0]} {RNA1509_10073, RNA1509_114, RNA1509_1179, RNA1509_1771, RNA1509_18204, RNA1509_18216, RNA1509_2105, RNA1509_24526, RNA1509_25464, RNA1509_29669, RNA1509_3162, RNA1509_3171, RNA1509_6016, RNA1509_6222, RNA1509_8584} {SMEDTYPE: Neoblast [dd_Smed_v6_11729_0_1, cytoplasmic poly(A) binding protein (PABPC)]} {SMEDTYPE: X1 [raj_facs_types]} {SMEDTYPE: Sexual_biased [CUFF.36071.0]}
8. MligTC451_28554 Mlig080991.g1 8.52

 Irradiation 

 Int S/G2/M 

 Germline 

Mlig080991.g1 {REF} {Length: 798} {RNA1509_260, RNA1509_318, RNA1509_361}
9. MligTC451_39705 Mlig011389.g1 8.39

 Int S/G2/M 

 Germline 

X2 P4HB Mlig011389.g1 {REF} {Length: 3264} {Pfam: Thioredoxin [PF00085.20, score=219.0]; Thioredoxin-like domain [PF13848.6, score=150.4]; Thioredoxin-like domain [PF13098.6, score=58.6]; Calsequestrin [PF01216.17, score=52.1]; Thioredoxin-like [PF13905.6, score=48.3]; OST3 / OST6 family, transporter family [PF04756.13, score=46.6]; ERp29, N-terminal domain [PF07912.13, score=42.6]; Thioredoxin-like [PF13899.6, score=42.0]; AhpC/TSA family [PF00578.21, score=36.3]; Redoxin [PF08534.10, score=31.2]; F plasmid transfer operon protein [PF13728.6, score=22.6]} {Human: ENSG00000185624, P4HB, prolyl 4-hydroxylase subunit beta, [RH, Score=572, Expect=0.0]} {Mouse: ENSMUSG00000025130, P4hb, prolyl 4-hydroxylase, beta polypeptide, [RH, Score=563, Expect=0.0]} {Dmel: FBgn0014002, Pdi, Protein disulfide isomerase, [RH, Score=510, Expect=3e-178]} {Celegans: WBGene00003963, pdi-2, Protein disulfide-isomerase 2, [RH, Score=565, Expect=0.0]} {Smed: dd_Smed_v6_250_0_1, dd_Smed_v6_250_0_1, [RH, Score=578, Expect=0.0]} {Ipul: Ipul011313.g1, Ipul011313.g1, [RH, Score=466, Expect=5e-161]} {RNA1509_1575, RNA1509_29298, RNA1509_70} {SMEDTYPE: X2 [raj_facs_types]}
10. MligTC451_59824 Mlig085595.g18 8.34

 Irradiation 

 Int S/G2/M 

 Germline 

WBP2NL Mlig085595.g18 {REF} {Length: 1337} {Human: ENSG00000183066, WBP2NL, WBP2 N-terminal like, [RH, Score=54.7, Expect=3e-08]} {Mouse: ENSMUSG00000022455, Wbp2nl, WBP2 N-terminal like, [Score=59.3, Expect=1e-09]} {RNA1509_47}
11. MligTC451_17934 Mlig004264.g2 8.11

 Int S/G2/M 

 Germline 

Xins; Sexual_biased CALR Mlig004264.g2 {REF} {Length: 2377} {Pfam: Calreticulin family [PF00262.18, score=289.7]} {Human: ENSG00000179218, CALR, calreticulin, [RH, Score=499, Expect=2e-176]} {Mouse: ENSMUSG00000003814, Calr, calreticulin, [RH, Score=500, Expect=7e-177]} {Dmel: FBgn0005585, Calr, Calreticulin, [RH, Score=495, Expect=3e-175]} {Celegans: WBGene00000802, crt-1, Calreticulin, [RH, Score=475, Expect=1e-167]} {Smed: dd_Smed_v6_220_0_4, dd_Smed_v6_220_0_4, [RH, Score=557, Expect=0.0]} {Ipul: Ipul010647.g4, Ipul010647.g4, [RH, Score=532, Expect=0.0]} {RNA1509_145, RNA1509_1668} {SMEDTYPE: Xins [raj_facs_types]} {SMEDTYPE: Sexual_biased [CUFF.88366.0]}
12. MligTC451_27401 Mlig013858.g7 7.9

 Irradiation 

 Int S/G2/M 

 Germline 

Mlig013858.g7 {REF} {Length: 2604} {RNA1509_2033, RNA1509_23832, RNA1509_51475, RNA1509_5941, RNA1509_9566}
13. MligTC451_37732 Mlig033002.g8 7.73

 Irradiation 

 Int S/G2/M 

 Germline 

Mlig033002.g8 {REF} {Length: 1305} {Pfam: Protein of unknown function (DUF1180) [PF06679.12, score=20.0]} {RNA1509_1627, RNA1509_39435, RNA1509_4375, RNA1509_8024}
14. MligTC451_37730 Mlig012955.g9 7.66

 Irradiation 

 Int S/G2/M 

 Germline 

Mlig012955.g9 {REF} {Length: 2364} {TRANSSPLICED} {RNA1509_10915, RNA1509_14686, RNA1509_163, RNA1509_224, RNA1509_5645}
15. MligTC451_27142 Mlig003532.g2 7.65

 Irradiation 

 Int S/G2/M 

 Germline 

Mlig003532.g2 {REF} {Length: 783} {RNA1509_21368, RNA1509_2865, RNA1509_36542, RNA1509_3936, RNA1509_51339, RNA1509_59, RNA1509_8674}
16. MligTC451_45231 Mlig032789.g3, Mlig032789.g4 7.49

 Irradiation 

 Int S/G2/M 

 Germline 

X1 DDX6

Mlig032789.g3 {REF} {Length: 3238} {TRANSSPLICED} {Pfam: DEAD/DEAH box helicase [PF00270.29, score=147.1]; Helicase conserved C-terminal domain [PF00271.31, score=98.2]} {Human: ENSG00000110367, DDX6, DEAD-box helicase 6, [RH, Score=659, Expect=0.0]} {Mouse: ENSMUSG00000032097, Ddx6, DEAD (Asp-Glu-Ala-Asp) box polypeptide 6, [RH, Score=659, Expect=0.0]} {Dmel: FBgn0004419, me31B, maternal expression at 31B, [RH, Score=651, Expect=0.0]} {Celegans: WBGene00000479, cgh-1, ATP-dependent RNA helicase cgh-1, [RH, Score=641, Expect=0.0]} {Smed: dd_Smed_v6_1034_0_1, dd_Smed_v6_1034_0_1, [RH, Score=701, Expect=0.0]} {Ipul: Ipul002558.g1, Ipul002558.g1, [RH, Score=586, Expect=0.0]} {RNA1509_1529, RNA1509_2093, RNA1509_54247, RNA1509_54688, RNA1509_85} {SMEDTYPE: X1 [raj_facs_types]}

Mlig032789.g4 {REF} {Length: 3238} {TRANSSPLICED} {Pfam: DEAD/DEAH box helicase [PF00270.29, score=147.1]; Helicase conserved C-terminal domain [PF00271.31, score=98.2]} {Human: ENSG00000110367, DDX6, DEAD-box helicase 6, [RH, Score=659, Expect=0.0]} {Mouse: ENSMUSG00000032097, Ddx6, DEAD (Asp-Glu-Ala-Asp) box polypeptide 6, [RH, Score=659, Expect=0.0]} {Dmel: FBgn0004419, me31B, maternal expression at 31B, [RH, Score=651, Expect=0.0]} {Celegans: WBGene00000479, cgh-1, ATP-dependent RNA helicase cgh-1, [RH, Score=641, Expect=0.0]} {Smed: dd_Smed_v6_1034_0_1, dd_Smed_v6_1034_0_1, [RH, Score=701, Expect=0.0]} {Ipul: Ipul002558.g1, Ipul002558.g1, [RH, Score=586, Expect=0.0]} {RNA1509_2093} {SMEDTYPE: X1 [raj_facs_types]}
17. MligTC451_21963 Mlig002706.g3 7.47

 Irradiation 

 Int S/G2/M 

 Germline 

Neural (both ciliated and non-ciliated); Xins GLIPR1L1 Mlig002706.g3 {REF} {Length: 1249} {Pfam: Cysteine-rich secretory protein family [PF00188.26, score=82.5]} {Human: ENSG00000173401, GLIPR1L1, GLIPR1 like 1, [RH, Score=115, Expect=3e-31]} {Mouse: ENSMUSG00000020213, Glipr1l1, GLI pathogenesis-related 1 like 1, [RH, Score=125, Expect=3e-35]; ENSMUSG00000112611, Glipr1l3, GLI pathogenesis-related 1 like 3, [RH, Score=122, Expect=3e-34]} {Dmel: FBgn0038126, CG8483, [RH, Score=124, Expect=9e-34]} {Celegans: WBGene00009892, scl-11, SCP-Like extracellular protein, [RH, Score=87.4, Expect=2e-21]} {Smed: dd_Smed_v6_6756_0_1, dd_Smed_v6_6756_0_1, [RH, Score=156, Expect=2e-48]} {Ipul: Ipul014814.g1, Ipul014814.g1, [RH, Score=93.6, Expect=2e-22]} {RNA1509_2231, RNA1509_234, RNA1509_46275, RNA1509_46434} {SMEDTYPE: Neural (both ciliated and non-ciliated) [dd_Smed_v6_6756_0_1, peptidase inhibitor 15 (PI15)]} {SMEDTYPE: Xins [raj_facs_types]}
18. MligTC451_37673 Mlig011676.g3 7.44

 Irradiation 

 Int S/G2/M 

 Germline 

X1; self-renewal TUBB Mlig011676.g3 {REF} {Length: 2016} {Pfam: Tubulin/FtsZ family, GTPase domain [PF00091.25, score=227.9]; Tubulin C-terminal domain [PF03953.17, score=147.5]; Misato Segment II tubulin-like domain [PF10644.9, score=24.5]} {Human: ENSG00000229684, TUBB, tubulin beta class I, [Score=766, Expect=0.0]; ENSG00000224156, TUBB, tubulin beta class I, [Score=766, Expect=0.0]; ENSG00000232421, TUBB, tubulin beta class I, [Score=766, Expect=0.0]; ENSG00000258947, TUBB3, tubulin beta 3 class III, [Score=766, Expect=0.0]; ENSG00000232575, TUBB, tubulin beta class I, [Score=766, Expect=0.0]; ENSG00000196230, TUBB, tubulin beta class I, [Score=766, Expect=0.0]; ENSG00000183311, TUBB, tubulin beta class I, [Score=766, Expect=0.0]; ENSG00000227739, TUBB, tubulin beta class I, [Score=766, Expect=0.0]; ENSG00000235067, TUBB, tubulin beta class I, [Score=766, Expect=0.0]; ENSG00000188229, TUBB4B, tubulin beta 4B class IVb, [Score=764, Expect=0.0]; ENSG00000137285, TUBB2B, tubulin beta 2B class IIb, [Score=764, Expect=0.0]; ENSG00000137267, TUBB2A, tubulin beta 2A class IIa, [Score=759, Expect=0.0]; ENSG00000104833, TUBB4A, tubulin beta 4A class IVa, [Score=756, Expect=0.0]; ENSG00000176014, TUBB6, tubulin beta 6 class V, [Score=731, Expect=0.0]; ENSG00000198211, AC092143.1, novel protein (MC1R-TUBB3 readthrough), [Score=730, Expect=0.0]; ENSG00000261456, TUBB8, tubulin beta 8 class VIII, [Score=728, Expect=0.0]} {Mouse: ENSMUSG00000001525, Tubb5, tubulin, beta 5 class I, [Score=766, Expect=0.0]; ENSMUSG00000036752, Tubb4b, tubulin, beta 4B class IVB, [Score=764, Expect=0.0]; ENSMUSG00000045136, Tubb2b, tubulin, beta 2B class IIB, [Score=764, Expect=0.0]; ENSMUSG00000062380, Tubb3, tubulin, beta 3 class III, [Score=764, Expect=0.0]; ENSMUSG00000058672, Tubb2a, tubulin, beta 2A class IIA, [Score=759, Expect=0.0]; ENSMUSG00000062591, Tubb4a, tubulin, beta 4A class IVA, [Score=756, Expect=0.0]; ENSMUSG00000001473, Tubb6, tubulin, beta 6 class V, [Score=731, Expect=0.0]} {Dmel: FBgn0003888, betaTub60D, beta-Tubulin at 60D, [Score=751, Expect=0.0]} {Celegans: WBGene00003171, mec-7, Tubulin beta-1 chain, [Score=737, Expect=0.0]} {Smed: dd_Smed_v6_83_0_3, dd_Smed_v6_83_0_3, [Score=771, Expect=0.0]} {Ipul: Ipul003352.g11, Ipul003352.g11, [Score=764, Expect=0.0]} {RNA1509_44} {SMEDTYPE: X1 [raj_facs_types]} {SMEDTYPE: self-renewal [4]}
19. MligTC451_17695 Mlig008960.g3 7.42

 Int S/G2/M 

 Germline 

Xins; Sexual_biased CALR Mlig008960.g3 {REF} {Length: 2381} {Pfam: Calreticulin family [PF00262.18, score=289.7]} {Human: ENSG00000179218, CALR, calreticulin, [RH, Score=499, Expect=2e-176]} {Mouse: ENSMUSG00000003814, Calr, calreticulin, [RH, Score=500, Expect=7e-177]} {Dmel: FBgn0005585, Calr, Calreticulin, [RH, Score=495, Expect=3e-175]} {Celegans: WBGene00000802, crt-1, Calreticulin, [RH, Score=475, Expect=1e-167]} {Smed: dd_Smed_v6_220_0_4, dd_Smed_v6_220_0_4, [RH, Score=557, Expect=0.0]} {Ipul: Ipul010647.g4, Ipul010647.g4, [RH, Score=532, Expect=0.0]} {RNA1509_145} {SMEDTYPE: Xins [raj_facs_types]} {SMEDTYPE: Sexual_biased [CUFF.88366.0]}
20. MligTC451_23595 Mlig011712.g5 7.32

 Irradiation 

 Int S/G2/M 

 Germline 

X1 LSM14A Mlig011712.g5 {REF} {Length: 3289} {Pfam: Scd6-like Sm domain [PF12701.7, score=94.1]; Ataxin 2 SM domain [PF14438.6, score=29.3]} {Human: ENSG00000262860, LSM14A, LSM14A, mRNA processing body assembly factor, [Score=119, Expect=2e-29]; ENSG00000257103, LSM14A, LSM14A, mRNA processing body assembly factor, [Score=119, Expect=2e-29]; ENSG00000149657, LSM14B, LSM family member 14B, [Score=114, Expect=2e-28]} {Mouse: ENSMUSG00000066568, Lsm14a, LSM14A mRNA processing body assembly factor, [Score=117, Expect=7e-30]} {Dmel: FBgn0041775, tral, trailer hitch, [RH, Score=102, Expect=2e-23]} {Celegans: WBGene00012484, car-1, Cytokinesis, Apoptosis, RNA-associated, [Score=110, Expect=3e-27]} {Smed: dd_Smed_v6_1125_0_1, dd_Smed_v6_1125_0_1, [Score=116, Expect=8e-29]} {Ipul: Ipul034369.g2, Ipul034369.g2, [Score=110, Expect=1e-26]} {RNA1509_1224, RNA1509_18892, RNA1509_244, RNA1509_24782, RNA1509_40925, RNA1509_55470, RNA1509_6395} {SMEDTYPE: X1 [raj_facs_types]}
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